SNPs/indels

Whole genome collections of SNP and short indel variants are available for 52 inbred strains. The variants are derived from Illumina short read sequencing data generated between 2013-2021 from a mixture of read lengths (100-150bp).

VCF Files

Reference GenomeVariantsAccession
GRCm39SNPsPRJEB53906
IndelsTBD
GRCm38SNPs/IndelsPRJEB43298

Interactive Queries

Some of our project partners have developed interactive portals for querying the variant catalogs:

  • Mouse Genome Informatics – SNP browser
  • Ensembl Genome Browser – see ‘Strain table’ under ‘Genetic variation’ on the left panel of the browser